2023年5月16日

亚马逊2023年5月16日,元素生物科学利用组学民主化基因组数据通过提供一个创新的联合计算模型元素生物科学公司——元素的开发者AVITI™系统,一个创新的扰乱基因组DNA测序平台行业,亚马逊宣布现在利用一个新的组学特性,Ready2Run工作流,提供简单、强大,和成本效益分析工作流。技术的结合使客户选择他们的测序数据流从AVITI™直接到云并自动执行后续分析使用亚马逊组学。亚马逊组学从亚马逊网络服务(AWS)是一个服务,帮助把重担从存储、查询和分析各种组学数据。Ready2Run工作流是一组预构建工作流从第三方软件公司和开源管道。只需要点击几下或者一个API调用,用户可以运行预先构建工作流执行分析,如转换基本调用FASTQ文件、二级分析,如基因表达或变种的召唤,和三级分析蛋白质结构预测等。Ready2Run工作流priced-per-run给客户可预测的和透明的定价。在亚马逊上元素的Bases2Fastq Ready2Run工作流组学使客户流从AVITI测序数据和执行亚马逊组学分析。这允许客户访问可伸缩的云计算,并行处理多个运行或样本的能力,和简单的组合多个下游二级或三级分析工具在一个平台,同时保持端到端控制他们自己的数据。数据安全是增强AVITI上运行Ubuntu核心,Linux操作系统。“这是快速和容易启动Bases2Fastq Ready2Run工作流。 We are excited to use this solution to streamline our pipelines and significantly shorten the time (and effort) between our data coming off AVITI and entering secondary analysis,” said Claire Seibold, Director of Software and Data Analytics at FYR Diagnostics. The Bases2Fastq Ready2Run workflows offer a fast and affordable sample demultiplex and FASTQ generation solution. The AVITI system’s dual flow cell capacity enables sequencing of up to six human whole genomes concurrently, each sequenced to a depth of around 30x. The Bases2Fastq Ready2Run workflow enables customers to demultiplex and convert their sequencing data into FASTQ files in less than two hours after completing the run. This process costs less than 1% of the total sequencing cost. By further leveraging the various secondary analysis Ready2Run workflows available in Amazon Omics, the conversion of FASTQ files to BAM or VCF files can be performed within a similar timeframe without incurring significant additional costs. Starting in Q3 2023, customers will also be able to use Elembio Cloud™, a new offering from Element Biosciences, to seamlessly configure orchestrating the automatic launch of Element’s Bases2Fastq Ready2Run workflows using Amazon Omics. “AVITI on Amazon Omics brings customers a cost-effective, scalable, and straightforward sample-to-answer workflow,” said Francisco Garcia, PhD, SVP of Informatics at Element. “Providing users control over their own data is key to Element’s mission to accelerate scientific progress.” “We’re excited to be working with companies like Element Biosciences to offer pre-built workflows as part of the new Ready2Run feature in Amazon Omics,” said Tehsin Syed, General Manager of Health AI, AWS. “Customers can now simply bring their data and run these workflows within minutes, making analysis easier and optimizing costs with predictable pricing.” previous post